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公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
[実験種別(Library strategy)とは]
[生物種上位500表示]
上位生物種の実験種別統計(全シーケンサーのランデータの件数)
[Illumina Series] [AB SOLiD Series] [454 Series] [PacBio Series] [Ion Torrent Series] [Other Sequencer]
No. Scientific Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS
1
Homo sapiens
142,515
149,191
76,887
39,428
29,307
37,317
7,493
805
4,599
4,443
298
2,945
4,078
990
651
822
679
40
1,262
597
90
323
257
285
74
55
28
12
19
21
67,656
2
Mus musculus
5,864
12,824
92,879
5,425
21,956
6,418
4,211
143
2,137
125
1,266
2
252
325
849
86
210
145
293
78
53
98
62
16
3
6
12,346
3
human gut metagenome
8,998
441
39,364
365
76
379
1
10,100
4
human metagenome
9,468
137
31,717
1
23
13,737
5
soil metagenome
29
654
394
36,538
158
39
25
2
1
1
1
32
1
5,865
6
Danio rerio
5,512
2,838
14,847
404
156
8,235
146
143
6
5
24
49
49
14
6
1,966
7
Streptococcus pneumoniae
18
32,526
88
84
16
3
8
Oryza sativa
83
29,226
1,512
108
38
189
44
6
1
10
20
323
9
Plasmodium falciparum
10,356
135
17,929
60
2
3
27
5
841
10
Saccharomyces cerevisiae
10,360
5,767
137
2,847
32
19
175
56
5
10
767
31
538
79
7,884
11
Staphylococcus aureus
27,370
387
128
17
4
7
462
12
Drosophila melanogaster
3,619
11,025
110
3,479
4
32
13
4
5
203
881
49
97
162
6
14
106
16
18
8,191
13
gut metagenome
1,556
55
19,537
262
119
51
4,772
14
synthetic construct
27
459
295
41
7
21,361
7
310
8
31
11
1,488
15
Salmonella enterica
20,719
1
7
48
16
Escherichia coli
17,728
1,551
672
53
6
12
24
47
11
1
3
10
467
17
Salmonella enterica subsp. enterica
19,027
82
4
18
mouse gut metagenome
2,006
240
14,893
179
201
2
8
22
44
741
19
Caenorhabditis elegans
9,182
2,732
7
2,881
37
161
289
176
28
1
20
234
20
Arabidopsis thaliana
2,254
5,445
2,872
905
6
2,300
448
131
53
100
170
26
10
5
131
2
829
21
Mycobacterium tuberculosis
15
15,068
353
57
17
8
7
3
5
18
22
metagenome sequence
1,331
541
11,641
4
1
889
23
marine metagenome
2,775
530
7,832
16
88
97
9
42
5
815
24
human skin metagenome
1,345
9
5,790
20
675
25
3,676
25
Anopheles gambiae
9,881
545
47
5
80
18
4
8
54
26
rhizosphere metagenome
30
37
9,155
32
789
27
human oral metagenome
456
170
8,279
14
1
929
28
Neisseria meningitidis
9,352
4
29
Listeria monocytogenes
9,283
24
7
1
33
30
unidentified
5,880
90
2,415
8
38
3
9
340
31
Streptococcus pyogenes
8,250
97
3
5
4
102
32
Campylobacter sp.
7,695
33
Rattus norvegicus
4
398
5,680
124
495
146
21
236
10
60
29
1
23
14
6
11
385
34
Bos taurus
21
3,190
2,691
312
24
2
19
60
161
302
37
2
6
1
47
277
35
Klebsiella pneumoniae
5,704
392
63
1
55
202
36
Hordeum vulgare subsp. vulgare
46
194
68
42
81
5,042
6
42
469
37
Campylobacter jejuni
5,880
3
38
Zea mays
404
4,322
41
136
65
97
24
4
84
2
16
393
39
freshwater metagenome
1
428
166
4,465
10
6
383
40
(tax_id:1227552)
669
4,784
41
[Clostridium] difficile
4,511
40
26
74
801
42
Salmonella enterica subsp. enterica serovar Typhi
4,813
21
93
19
12
109
43
Saccharomyces cerevisiae S288c
4,252
93
311
6
8
44
(tax_id:1256227)
97
1,595
92
2,606
45
Salmonella enterica subsp. enterica serovar Typhimurium
3,082
189
644
52
21
2
291
90
46
aquatic metagenome
102
179
3,970
3
16
12
36
23
47
Gasterosteus aculeatus
2,912
339
1
16
4
999
48
uncultured bacterium
141
42
3,674
20
88
2
1
48
49
Sus scrofa
4
787
957
221
26
9
54
1,033
1
189
22
10
213
1
326
50
Pseudomonas aeruginosa
3,011
500
44
70
2
25
194
51
bovine gut metagenome
202
10
3,453
72
2
52
unclassified Bacteria (miscellaneous)
2,555
138
1,042
53
Manihot esculenta
416
108
3
6
4
3,111
54
unclassified sequences
1,094
1,933
599
55
Macaca mulatta
56
1,249
1,034
648
178
2
121
9
92
35
3
4
10
137
56
sediment metagenome
152
64
2,970
73
2
40
5
13
2
107
57
(tax_id:1348798)
41
18
1,766
1
1
1,579
58
Vibrio cholerae
3,146
53
7
5
6
59
Neisseria gonorrhoeae
13
3,060
38
2
4
60
Populus trichocarpa
1,392
1,231
4
1
486
61
Acinetobacter baumannii
2,360
269
236
135
101
62
metagenomes
1,612
9
1,138
321
63
Canis lupus familiaris
1,723
758
257
15
50
63
136
20
1
51
64
human lung metagenome
159
2,795
100
65
Human immunodeficiency virus 1
67
631
21
1,632
1
682
66
Triticum aestivum
1
478
973
147
4
3
44
28
2
38
206
1,101
67
Oncorhynchus mykiss
345
429
2
3
18
41
6
22
2,070
68
Glycine max
845
1,074
63
4
229
41
146
10
80
40
354
69
wastewater metagenome
121
47
2,650
12
2
7
23
70
Solanum lycopersicum
951
1,404
51
23
36
43
48
39
25
111
71
viral metagenome
2,511
94
36
24
8
72
Shigella sonnei
2,625
12
7
73
(tax_id:1441287)
843
1,733
74
Brassica napus
763
811
14
3
4
3
21
2
889
75
food metagenome
179
18
2,141
141
76
Sorghum bicolor
2,132
218
1
5
2
3
98
77
Schizosaccharomyces pombe
861
619
50
606
15
33
45
7
201
78
Streptococcus agalactiae
2,359
17
33
79
Enterococcus faecium
2,292
1
4
3
3
1
80
Miscanthus sinensis
5
2,099
18
1
160
81
Equus caballus
328
840
783
150
1
4
15
61
7
12
24
82
(tax_id:1494075)
2,209
83
hydrocarbon metagenome
123
6
2,023
2
84
marine sediment metagenome
201
308
1,486
3
6
10
6
101
85
(tax_id:1561972)
1
1,978
136
86
human nasopharyngeal metagenome
4
2
2,080
1
10
87
(tax_id:1297885)
115
7
1,965
1
88
Gallus gallus
300
1,157
1
107
12
1
51
6
8
14
12
10
402
89
root metagenome
16
2,035
2
4
90
biofilm metagenome
30
42
44
1,825
10
9
5
7
36
91
Mycobacterium abscessus
1,961
18
92
Zaire ebolavirus
1
994
803
160
93
Escherichia coli str. K-12 substr. MG1655
1,311
370
9
75
6
23
16
9
8
93
94
(tax_id:1202446)
7
2
1,757
52
95
Streptococcus suis
814
6
344
614
96
Haemonchus contortus
1,592
86
95
4
97
sponge metagenome
3
28
539
1,177
98
Salmo salar
440
309
35
1
879
99
Shigella flexneri
1,621
30
7
1
100
(tax_id:1436733)
93
1,383
40
131
No. Scientific Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS