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公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
実験種別(Library strategy)とは
機関名称リスト (Center Name List)
機関毎の実験種別統計(ランデータの件数)
No. Center Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS
1
SC
14,194
203,941
37,466
5,036
2,213
7,484
3,122
5,234
122
33
78
359
8
11,643
2
GEO
91
153,665
104
53,311
32
11,190
4,722
258
4,221
2,253
1,691
1,697
15
1,364
1,179
184
12
292
18
27
28,943
3
BI
67,920
78,363
22,286
35,125
10
51
4
43
265
245
9
16,574
4
BGI
790
54,946
586
147
110
35,630
211
22,331
5
WUGSC
20,738
3,753
58
3
97
25,578
6
BCM
24,797
9,113
272
1,520
6
59
240
1
4,802
7
UCSD
7
38,882
39
61
40
26
54
25
8
CFSAN
27,999
191
9
The Wellcome Trust Sanger Institute
697
18,056
3,630
1,150
294
1,718
364
992
5
687
10
CCME-COLORADO
23,730
1,667
1,135
11
Department of Biosciences and Nutrition, Karolinsk
12
21,615
12
UCSDMI
15,598
13
JGI
168
9,093
1,993
938
3
603
640
1,728
14
UMIGS
142
4,433
1,744
7,775
2
11
15
JCVI
10,152
735
1,796
5
1
5
244
16
PHE
11,008
8
17
PCGC
10,862
109
18
EDLB-CDC
10,057
334
19
BCCAGSC
30
1,460
1,654
48
1,275
29
1,172
15
3,260
782
20
NISC
2,644
1,609
5,259
4
21
WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES
1,060
110
7,327
299
330
22
University of California San Diego Microbiome Init
9,093
23
UPENNBL
414
5
8,563
24
UWGS-RW
7,758
273
351
25
Stanford University
154
2,549
752
1,974
39
201
1,548
23
44
263
26
NCBI
46
6,254
29
19
7
1
18
27
MPI-EVA
730
2,578
1,684
1,168
28
University of Oxford
5,550
157
54
58
2
176
16
1
29
INRA
339
414
4,086
5
98
26
22
6
932
30
ISB-USA
202
5,418
31
HMRI-DID
5,275
32
NCGR
3,470
861
8
15
10
18
95
707
33
Leibniz Institute of Plant Genetics and Crop Plant
44
194
17
14
4,161
2
89
373
34
CGS-GL
150
4,704
35
STANFORD-BOYD
4,686
36
UWGS-NWGC
4,643
42
37
UNIVERISTY OF OXFORD
3,463
82
826
38
USC
4,120
4
1
90
39
G2L
48
4,086
40
CIDR
3,809
243
41
KI-BN
1
4
38
2
6
2
3,977
42
VCU-CSBC
8
3,997
43
UCD-100K
3,945
44
KYOTO_HE
1
3,871
1
45
University of Washington
117
2,085
226
391
14
16
46
68
18
838
46
Beijing Genome Institute
3,642
88
2
1
47
RIKEN_OSC
33
2
13
37
3
3,422
48
UM-SPH
3,363
49
HMP-DACC
3,285
50
DOE Joint Genome Institute
115
455
2,668
51
CompleteGenomics
1
3,106
129
52
KYUSHU
5
3,049
87
53
WEIZMANN INSTITUE OF SCIENCE
1,862
814
324
104
54
AgResearch
2
3,007
2
55
European Molecular Biology Laboratory
21
137
162
21
17
2,589
56
Uppsala University
1,692
118
1,052
2
10
30
57
MBL
291
14
2,519
16
6
2
4
58
University of California
32
13
2,692
59
University of Oregon
285
19
808
40
1,570
60
GSC
1,698
288
451
77
5
2
117
61
ncbi
273
2,268
56
62
KYOTO-GE
2,541
63
University of GM-CM-6ttingen
2,494
64
University of Colorado
102
4
2,220
52
65
University of Calgary
117
2,245
2
66
USDA-FSIS
2,308
44
67
University of British Columbia
634
869
690
26
84
68
EMBL
1,669
32
255
71
29
6
16
200
69
University of Florida
48
218
152
1,700
1
3
80
3
29
4
6
70
OX
2,183
71
Indiana University
858
1,162
120
1
6
2
6
9
72
ILLUMINA
5
2,105
43
3
73
Harvard School of Public Health
37
2,117
74
MSU-BUELL
555
79
1,497
1
75
Cornell University
831
417
330
3
66
30
1
5
432
76
EMBL - Germany
1,860
225
77
University of Edinburgh
81
310
82
19
5
1,569
78
University of Minnesota
462
645
586
2
51
20
3
3
288
79
CENTRE FOR GEOGENETICS
2,044
8
80
Weill Cornell Medical College
61
27
90
225
18
1,629
81
TGEN
38
948
578
54
395
82
Duke University
317
155
1,153
4
69
22
8
16
4
176
83
UT-MGS
91
815
486
26
7
256
205
84
FZB
1,881
5
85
SMU
196
1,659
86
Swedish University of Agricultural Sciences
12
42
1,774
24
87
US Department of Agriculture
1,831
88
National Center for Gene Research, Chinese Academy
1,632
32
2
57
89
BGI-SHENZHEN
3
1,708
90
New York University
146
14
1,475
35
12
8
91
University of California, Davis
24
1,158
2
471
1
92
LSHTM
1,614
2
20
93
Center for Genome Sciences & Systems Biology
91
1,242
302
94
Texas A&M University
76
450
1,101
1
1
2
95
The University of North Carolina at Chapel Hill
1,630
96
Harvard University
156
675
275
178
45
201
8
2
3
72
97
JMKIDD_LAB
1,610
98
University of Melbourne
258
99
1,056
8
180
99
Department of Cell and Molecular Biology, Karolins
58
1,529
100
USDA Agriculture Research Service
28
3
3
1,550
101
GriceLab
899
675
102
ABI
1,569
103
Washington University in St. Louis
55
80
8
1,006
391
104
FDA
1,403
133
105
Livestock Improvement Corporation
1,523
106
Fudan University
93
45
1,372
1
6
107
ED
13
632
2
866
108
MPIPZ
919
6
585
109
Southern Medical University
223
1,280
2
110
Shanghai Jiao Tong University
23
8
1,167
13
291
111
UC Berkeley
157
187
999
32
12
90
2
112
CSISP
265
1,182
1
4
6
113
PacBio
1,405
19
114
HHMI and University of North Carolina at Chapel Hi
144
1,277
115
UNIVERSITY OF WATERLOO
1,401
1
116
UC Davis
460
275
611
10
45
117
Weill Cornell
7
1,026
365
118
Centre Inra de Corse
1,392
119
Y-CMG
1,366
120
UCDTILL
84
702
66
442
58
121
PUBLIC HEALTH ENGLAND
1,346
5
122
University of Maryland
198
63
1,051
9
16
123
University of Southern California
864
155
133
47
115
21
124
IMPERIAL COLLEGE
1,319
125
Colorado Center for Microbial Ecology, University
126
SUB988182
1,296
127
BCG-DANVERS
1,295
128
Universite Laval, Canada
1,276
129
University of Tennessee
20
384
864
130
Memorial Sloan Kettering Cancer Center
15
415
26
299
13
419
75
131
EMBL-EBI
1,106
47
15
84
132
University of Georgia
202
265
375
193
41
24
123
4
18
133
University of Utah
52
71
1,071
7
32
134
University of Michigan
32
362
97
690
6
42
135
IPK-Gatersleben
13
58
9
895
3
248
136
majorbio
3
116
848
205
40
137
UT_COB
916
288
138
GREGOR MENDEL INSTITUTE
1,196
139
Max Planck Institute for Evolutionary Anthropology
812
256
109
140
OIST
173
450
2
539
141
KAUST
56
299
797
7
142
Washington University School of Medicine
38
14
1,106
143
NIG
741
63
181
9
86
4
16
17
40
144
UNIVERSITY OF SOUTHERN CALIFORNIA
1,149
145
Department of Genome Sciences, University of Washi
1,147
146
Max Planck Institute for Evolutionary Biology, Plo
560
154
173
201
47
147
University of Illinois
620
148
184
80
30
60
148
Institute of Ecology and Earth Sciences, Universit
1,108
149
Iowa State University
68
933
88
1
2
6
6
150
DTU
1,077
26
151
Seoul National University
1
308
53
721
1
5
12
152
ERIBA, RUG , UMC GRONINGEN
1,098
153
Huazhong Agricultural University
811
156
2
97
3
2
17
154
Geuvadis
631
452
155
Michigan State University
191
565
114
130
1
17
54
156
UPSC
133
25
900
157
UPENN-phs000834
1,058
158
USDA-ARS
361
123
287
1
6
1
269
159
Massachusetts Institute of Technology
656
190
34
29
24
55
58
160
University of New Mexico
4
35
92
908
161
WASHINGTON UNIVERSITY SCHOOL OF MEDICINE
162
Oregon State University
582
139
236
26
8
2
6
24
163
Fred Hutchinson Cancer Research Center
83
281
590
16
44
164
University of Toronto
12
675
131
124
44
2
18
4
165
UFZ
983
166
MPIMG
22
753
49
24
2
3
126
167
Boyce Thompson Institute
30
836
19
47
4
37
6
168
The UT MD Anderson Cancer Center
971
169
NYU
945
16
170
UCLA
55
6
539
45
28
40
3
226
171
UMCU
181
620
135
172
TGAC
59
798
11
4
3
4
49
173
ACTA
928
174
UMAG
88
838
175
Nanjing Agricultural University
327
251
302
35
1
176
University of Helsinki
14
36
676
71
1
55
8
38
13
177
Emory University
6
732
16
107
5
27
2
9
178
USDA-NVSL-DBL
894
179
University of Illinois, Urbana-Champaign
887
4
180
ETH Zurich
71
16
84
1
714
181
RIKEN_CLST_DGT
285
482
4
92
2
17
182
UCSF
19
401
105
60
1
288
183
University of Sheffield
60
129
80
603
184
UM-MCTP
192
659
19
185
IFH_MS
869
186
EMBL EBI
869
187
BDGP
21
9
835
188
Yale University School of Medicine
864
189
University of Dundee
40
729
1
76
18
190
University College Cork
864
191
University of Hawaii at Manoa
3
845
6
3
192
University of Copenhagen
454
64
328
1
5
193
INRA-CMSE
852
194
University of Nebraska
7
829
6
195
University of Alberta
176
105
120
8
246
181
196
University of Tartu
22
16
795
197
University of Texas at Austin
13
185
593
8
2
28
3
198
Duke-NUS Graduate Medical School, Singapore
410
409
10
199
PNRI
202
616
200
AALBORG UNIVERSITY
64
751
201
Universite Laval
101
164
183
358
202
"University of Illinois, Urbana-Champaign"
806
203
Genoscreen
804
204
Harvard Medical School
3
360
109
298
4
12
2
10
205
Microbiology and Immunology
793
206
Duke University-phs000654
792
207
TUAGRI
238
306
12
170
4
56
208
CRIBI
764
20
209
Boston Children's Hospital
19
569
31
150
11
210
University of Saskatchewan
5
4
735
8
22
211
University of Oslo
190
540
5
4
10
24
212
University of Colorado at Boulder
767
213
NIMH
767
214
McGill University
6
83
35
602
6
15
12
3
215
MSKCC
73
34
232
2
405
216
Centers for Disease Control and Prevention
459
284
2
217
The Whitehead Institute for Biomedical Research
739
218
UOL_CGR
604
10
95
13
9
219
BC Centre for Disease Control
729
220
GILAB
725
221
WRAIR-MRSN
724
222
UCSF-phs000989
718
223
University of Queensland
229
183
226
1
23
50
224
Technical University of Denmark
5
586
39
32
1
46
225
USDA
322
331
9
41
2
226
San Valley Biotechnology Inc.
705
227
uchicago-phs000680
704
228
Boston University
36
180
3
481
229
Pennsylvania State University
82
72
235
299
3
2
3
1
230
King Abdullah University of Science and Technology
154
52
445
45
231
Fluidigm Inc
696
232
Oak Ridge National Laboratory
198
43
432
1
11
233
University of Oklahoma
193
420
4
60
234
NIAS
208
433
6
5
1
6
17
235
UWGS-JS
169
259
3
10
234
236
The Pennsylvania State University
361
4
159
105
45
237
UW/School of Aquatic & Fishery Sciences
671
238
Cold Spring Harbor Laboratory
559
3
3
51
23
5
10
17
239
CSHL
21
609
34
1
5
240
Virginia Commonwealth University
404
16
242
4
1
241
University of Arizona
210
386
28
1
30
11
1
242
CNRS
3
23
140
73
3
2
7
34
17
273
92
243
IrsiCaixa
654
244
Stowers Institute for Medical Research
599
48
6
245
CUMICRO
649
246
University of California, Berkeley
53
347
47
167
19
7
2
247
UWGS-EL
620
3
19
248
GWU-phs000769
642
249
UWML
630
6
250
Università di Napoli Federico II - Dipartimento di
632
251
UIUC
8
8
28
580
7
1
252
TGEN-NORTH
564
10
57
253
Genoscope
589
11
3
1
1
26
254
JHI
61
38
531
255
Wellcome Trust Sanger Institute
628
256
Virginia Tech
86
42
68
14
2
412
257
University of Wyoming, Botany
621
258
University of Illinois at Urbana-Champaign
183
212
215
8
259
MDC
3
448
18
14
3
7
120
260
Virginia Bioinformatics Institute
2
605
5
261
The Rockefeller University
8
179
344
38
38
262
SUDB-QL
444
3
159
263
Weizmann Institute of Science
83
190
11
4
316
264
IRHS
602
265
Cleveland Clinic Foundation
17
554
23
6
266
DOE-Joint Genome Institute
156
442
267
University of Auckland
1
589
6
268
Comai Lab
591
269
University of Nebraska-Lincoln
20
202
365
1
1
270
University LAVAL
578
271
Tanklab
571
4
272
NCI-phs001027
574
273
Northern Arizona University
573
274
Department of Plant Biology, University of Califor
78
494
275
University of Idaho
2
507
61
276
University of Colorado School of Medicine
12
558
277
UU
291
10
223
12
6
10
18
278
Université Laval
303
18
228
5
7
279
UNIBE-ISME
561
280
Washington University in Saint Louis
389
171
281
CSIRO
110
343
92
8
2
1
2
1
282
KAROLINSKA INSITUTET
3
4
2
92
456
283
Nanjing Forestry University
213
29
5
308
284
University of Vermont
1
538
15
285
Institute of Vegetables and Flowers, Chinese Acade
549
2
286
Wageningen University
402
31
59
29
29
287
VHIR
548
288
Cancer Science Institute of Singapore
528
19
289
GlaxoSmithKline
10
535
290
SUB1036337
544
291
Peking University
190
13
32
5
16
66
47
29
143
292
Georgia State University
2
538
293
ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE
3
537
294
The Genome Analysis Centre
102
272
35
22
1
2
101
4
295
MCGILL UNIVERSITY
40
498
296
CENTRE FOR GENOMIC RESEARCH (CGR)
535
297
HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.
531
298
STJUDE
287
144
96
299
Dana-Farber Cancer Institute
206
127
190
No. Center Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS