データ開発拠点Cell Innovation


  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
公共サイト別登録データ件数
Data
(Accession prefix)
NCBI (SRA)
(rate%)
EBI (ERA)
(rate%)
DDBJ (DRA)
(rate%)
Total
Submission Data
(SRA,ERA,DRA)
366,339
(58.5%)
256,729
(40.9%)
3,116
(0.4%)
626,184
Experiment Data
(SRX,ERX,DRX)
1,692,807
(69.7%)
706,928
(29.1%)
28,674
(1.1%)
2,428,409
Run Data
(SRR,ERR,DRR)
3,375,612
(81.4%)
734,538
(17.7%)
31,716
(0.7%)
4,141,866
Sample Data
(SRS,ERS,DRS)
1,351,299
(71.4%)
512,991
(27.1%)
26,120
(1.3%)
1,890,410
Study Data
(SRP,ERP,DRP)
73,247
(85%)
10,153
(11.7%)
2,769
(3.2%)
86,169
Chart View

  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
[生物種上位500表示]
生物種上位100
No. Taxonomy
ID
Scientific name
Genbank
common name
Run Data
Counts
1
9606
Homo sapiens
human
573,167
2
10090
Mus musculus
house mouse
168,072
3
408170
human gut metagenome
59,724
4
646099
human metagenome
55,083
5
410658
soil metagenome
43,740
6
7955
Danio rerio
zebrafish
34,400
7
1313
Streptococcus pneumoniae
32,735
8
4530
Oryza sativa
rice
31,560
9
5833
Plasmodium falciparum
malaria parasite P. falciparum
29,358
10
4932
Saccharomyces cerevisiae
baker's yeast
28,707
11
1280
Staphylococcus aureus
28,375
12
7227
Drosophila melanogaster
fruit fly
28,034
13
749906
gut metagenome
26,352
14
32630
synthetic construct
24,045
15
28901
Salmonella enterica
20,775
16
562
Escherichia coli
20,585
17
59201
Salmonella enterica subsp. enterica
19,113
18
410661
mouse gut metagenome
18,336
19
6239
Caenorhabditis elegans
15,748
20
3702
Arabidopsis thaliana
thale cress
15,687
21
1773
Mycobacterium tuberculosis
15,551
22
256318
metagenome sequence
14,407
23
408172
marine metagenome
12,209
24
539655
human skin metagenome
11,540
25
7165
Anopheles gambiae
African malaria mosquito
10,642
26
939928
rhizosphere metagenome
10,043
27
447426
human oral metagenome
9,849
28
487
Neisseria meningitidis
9,356
29
1639
Listeria monocytogenes
9,348
30
32644
unidentified
8,783
31
1314
Streptococcus pyogenes
8,461
32
205
Campylobacter sp.
7,695
33
10116
Rattus norvegicus
Norway rat
7,643
34
9913
Bos taurus
cattle
7,152
35
573
Klebsiella pneumoniae
6,417
36
112509
Hordeum vulgare subsp. vulgare
domesticated barley
5,990
37
197
Campylobacter jejuni
5,883
38
4577
Zea mays
5,588
39
449393
freshwater metagenome
5,459
40
1227552
5,453
41
1496
[Clostridium] difficile
5,452
42
90370
Salmonella enterica subsp. enterica serovar Typhi
5,067
43
559292
Saccharomyces cerevisiae S288c
4,670
44
1256227
4,390
45
90371
Salmonella enterica subsp. enterica serovar Typhimurium
4,371
46
1169740
aquatic metagenome
4,341
47
69293
Gasterosteus aculeatus
three-spined stickleback
4,271
48
77133
uncultured bacterium
4,016
49
9823
Sus scrofa
pig
3,853
50
287
Pseudomonas aeruginosa
3,846
51
506599
bovine gut metagenome
3,739
52
49928
unclassified Bacteria (miscellaneous)
3,735
53
3983
Manihot esculenta
cassava
3,648
54
12908
unclassified sequences
3,626
55
9544
Macaca mulatta
Rhesus monkey
3,578
56
749907
sediment metagenome
3,428
57
1348798
3,406
58
666
Vibrio cholerae
3,217
59
485
Neisseria gonorrhoeae
3,117
60
3694
Populus trichocarpa
3,114
61
470
Acinetobacter baumannii
3,101
62
408169
metagenomes
3,080
63
9615
Canis lupus familiaris
dog
3,074
64
433733
human lung metagenome
3,054
65
11676
Human immunodeficiency virus 1
3,034
66
4565
Triticum aestivum
bread wheat
3,025
67
8022
Oncorhynchus mykiss
rainbow trout
2,936
68
3847
Glycine max
soybean
2,886
69
527639
wastewater metagenome
2,862
70
4081
Solanum lycopersicum
2,731
71
1070528
viral metagenome
2,673
72
624
Shigella sonnei
2,644
73
1441287
2,576
74
3708
Brassica napus
rape
2,510
75
870726
food metagenome
2,479
76
4558
Sorghum bicolor
sorghum
2,459
77
4896
Schizosaccharomyces pombe
fission yeast
2,437
78
1311
Streptococcus agalactiae
2,409
79
1352
Enterococcus faecium
2,304
80
62337
Miscanthus sinensis
eulalia
2,283
81
9796
Equus caballus
horse
2,225
82
1494075
2,209
83
938273
hydrocarbon metagenome
2,154
84
412755
marine sediment metagenome
2,121
85
1561972
2,115
86
1131769
human nasopharyngeal metagenome
2,097
87
1297885
2,088
88
9031
Gallus gallus
chicken
2,081
89
1118232
root metagenome
2,057
90
718308
biofilm metagenome
2,008
91
36809
Mycobacterium abscessus
1,979
92
186538
Zaire ebolavirus
1,958
93
511145
Escherichia coli str. K-12 substr. MG1655
1,920
94
1202446
1,818
95
1307
Streptococcus suis
1,778
96
6289
Haemonchus contortus
barber pole worm
1,777
97
1163772
sponge metagenome
1,747
98
8030
Salmo salar
Atlantic salmon
1,664
99
623
Shigella flexneri
1,659
100
1436733
1,647
- - -
Others
2,518,257
Total
4,141,866
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
シーケンサー別統計
No.
Sequencer
name
Run Data
Counts
1
Illumina HiSeq 2000
971,049
2
Illumina MiSeq
225,476
3
Illumina HiSeq 2500
180,221
4
454 GS FLX Titanium
153,872
5
Illumina Genome Analyzer II
127,326
6
Illumina Genome Analyzer IIx
58,502
7
454 GS FLX
43,775
8
Illumina Genome Analyzer
30,770
9
454 GS Junior
18,272
10
Ion Torrent PGM
16,225
11
PacBio RS II
15,670
12
PacBio RS
14,441
13
NextSeq 500
12,603
14
AB SOLiD 4 System
11,204
15
454 GS FLX+
10,662
16
Illumina HiSeq 1000
10,592
17
AB 5500xl Genetic Analyzer
8,676
18
AB SOLiD System 2.0
5,581
19
454 GS
5,302
20
AB 5500 Genetic Analyzer
5,035
21
Helicos HeliScope
4,089
22
Complete Genomics
3,800
23
Illumina HiSeq 1500
3,638
24
HiSeq X Ten
3,323
25
AB SOLiD System 3.0
2,834
26
Illumina HiScanSQ
2,289
27
Ion Torrent Proton
1,972
28
454 GS 20
1,275
29
AB SOLiD System
686
30
AB 3730xL Genetic Analyzer
615
31
MinION
411
32
Illumina HiSeq 4000
320
33
AB 5500xl-W Genetic Analysis System
319
34
AB SOLiD 3 Plus System
290
35
AB SOLiD 4hq System
157
36
AB 3130 Genetic Analyzer
101
37
Illumina HiSeq 3000
92
38
AB 3130xL Genetic Analyzer
27
39
AB 3730 Genetic Analyzer
21
40
NextSeq 550
19
41
454 GS FLX
10
42
AB 3500xL Genetic Analyzer
9
43
HiSeq X Five
6
44
AB SOLiD PI System
3
45
Illumina Genome Analyzer IIx
2
46
AB 3500 Genetic Analyzer
1
47
AB 310 Genetic Analyzer
1
-
Others (none,unspecified etc.)
2,190,302
Total
4,141,866
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
実験種別統計
No. Library strategy Run Data
Counts
1 WXS
979,915
2 WGS
779,149
3 RNA-Seq
540,526
4 AMPLICON
537,200
5 ChIP-Seq
69,009
6 POOLCLONE
49,471
7 SELEX
21,649
8 Bisulfite-Seq
20,967
9 CLONE
13,553
10 WGA
11,023
11 miRNA-Seq
10,966
12 EST
5,060
13 DNase-Hypersensitivity
4,464
14 Targeted-Capture
4,114
15 ncRNA-Seq
2,507
16 MNase-Seq
2,286
17 MeDIP-Seq
2,137
18 FL-cDNA
1,935
19 RAD-Seq
1,829
20 Tn-Seq
1,517
21 MBD-Seq
1,477
22 RIP-Seq
1,349
23 MRE-Seq
1,302
24 WCS
1,022
25 CTS
447
26 FAIRE-seq
401
27 CLONEEND
380
28 Hi-C
58
29 Synthetic-Long-Read
52
30 FINISHING
40
31 VALIDATION
29
32 ChIA-PET
28
- Others (unknown,OTHER etc.)
1,076,004
Total
4,141,866
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
年別統計
Year Run Data
Counts
2003
14
2004
62
2005
130
2006
227
2007
2,419
2008
17,699
2009
22,391
2010
68,350
2011
298,821
2012
443,585
2013
558,697
2014
780,122
2015
1,531,205
2016
418,094
Others (unknown)
50
Total
4,141,866
Chart View

Chart View

  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
機関別上位100
No. Center name Run Data
Counts
1 SC
290,933
2 GEO
265,269
3 BI
220,895
4 BGI
114,751
5 WUGSC
50,227
6 BCM
40,810
7 UCSD
39,134
8 CFSAN
28,190
9 The Wellcome Trust Sanger Institute
27,593
10 CCME-COLORADO
26,532
11 Department of Biosciences and Nutrition, Karolinsk
21,627
12 UCSDMI
15,598
13 JGI
15,166
14 UMIGS
14,107
15 JCVI
12,938
16 PHE
11,016
17 PCGC
10,971
18 EDLB-CDC
10,391
19 BCCAGSC
9,725
20 NISC
9,516
21 WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES
9,126
22 University of California San Diego Microbiome Init
9,093
23 UPENNBL
8,982
24 UWGS-RW
8,382
25 Stanford University
7,547
26 NCBI
6,374
27 MPI-EVA
6,160
28 University of Oxford
6,014
29 INRA
5,928
30 ISB-USA
5,620
31 HMRI-DID
5,275
32 NCGR
5,184
33 Leibniz Institute of Plant Genetics and Crop Plant
4,894
34 CGS-GL
4,854
35 STANFORD-BOYD
4,686
36 UWGS-NWGC
4,685
37 UNIVERISTY OF OXFORD
4,371
38 USC
4,215
39 G2L
4,134
40 CIDR
4,052
41 KI-BN
4,030
42 VCU-CSBC
4,005
43 UCD-100K
3,945
44 KYOTO_HE
3,873
45 University of Washington
3,819
46 Beijing Genome Institute
3,733
47 RIKEN_OSC
3,510
48 UM-SPH
3,363
49 HMP-DACC
3,285
50 DOE Joint Genome Institute
3,238
51 CompleteGenomics
3,236
52 KYUSHU
3,141
53 WEIZMANN INSTITUE OF SCIENCE
3,104
54 AgResearch
3,011
55 European Molecular Biology Laboratory
2,947
56 Uppsala University
2,904
57 MBL
2,852
58 University of California
2,737
59 University of Oregon
2,722
60 GSC
2,638
61 ncbi
2,597
62 KYOTO-GE
2,541
63 University of GM-CM-6ttingen
2,494
64 University of Colorado
2,378
65 University of Calgary
2,364
66 USDA-FSIS
2,352
67 University of British Columbia
2,303
68 EMBL
2,278
69 University of Florida
2,244
70 OX
2,183
71 Indiana University
2,164
72 ILLUMINA
2,156
73 Harvard School of Public Health
2,154
74 MSU-BUELL
2,132
75 Cornell University
2,115
76 EMBL - Germany
2,085
77 University of Edinburgh
2,066
78 University of Minnesota
2,060
79 CENTRE FOR GEOGENETICS
2,052
80 Weill Cornell Medical College
2,050
81 TGEN
2,013
82 Duke University
1,924
83 UT-MGS
1,886
84 FZB
1,886
85 SMU
1,855
86 Swedish University of Agricultural Sciences
1,852
87 US Department of Agriculture
1,831
88 National Center for Gene Research, Chinese Academy
1,723
89 BGI-SHENZHEN
1,711
90 New York University
1,690
91 University of California, Davis
1,656
92 LSHTM
1,636
93 Center for Genome Sciences & Systems Biology
1,635
94 Texas A&M University
1,631
95 The University of North Carolina at Chapel Hill
1,630
96 Harvard University
1,615
97 JMKIDD_LAB
1,610
98 University of Melbourne
1,601
99 Department of Cell and Molecular Biology, Karolins
1,587
100 USDA Agriculture Research Service
1,584
- Others
2,641,484
Total
4,141,866
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
シーケンサー別 ラン件数、リード数、塩基数、平均リード長
No. Sequencer name Runs Reads Bases Average length
of read
1
Illumina HiSeq 2000
971,049
34,501,613,523,936
3,141,626,358,992,820
91
2
Illumina MiSeq
225,476
265,253,889,528
46,987,465,300,481
177
3
Illumina HiSeq 2500
180,221
5,043,396,571,026
452,251,786,325,460
89
4
454 GS FLX Titanium
153,872
13,617,686,136
5,304,387,414,583
389
5
Illumina Genome Analyzer II
127,326
3,794,832,788,109
309,390,777,566,564
81
6
Illumina Genome Analyzer IIx
58,502
1,717,837,019,450
121,830,895,004,977
70
7
454 GS FLX
43,775
5,138,658,407
1,716,337,487,351
334
8
Illumina Genome Analyzer
30,770
569,724,856,653
28,199,304,398,996
49
9
454 GS Junior
18,272
173,607,989
79,778,798,448
459
10
Ion Torrent PGM
16,225
14,300,972,428
1,952,525,134,946
136
11
PacBio RS II
15,670
943,796,875
4,616,792,479,554
4,891
12
PacBio RS
14,441
2,195,496,670
10,606,857,018,837
4,831
13
NextSeq 500
12,603
223,630,629,758
18,680,343,215,159
83
14
AB SOLiD 4 System
11,204
1,044,056,283,990
47,312,350,071,046
45
15
454 GS FLX+
10,662
696,984,381
437,236,381,843
627
16
Illumina HiSeq 1000
10,592
325,769,000,613
28,861,709,835,366
88
17
AB 5500xl Genetic Analyzer
8,676
213,905,216,354
11,071,272,831,275
51
18
AB SOLiD System 2.0
5,581
117,840,748,536
3,678,916,657,301
31
19
454 GS
5,302
502,821,443
117,554,938,846
233
20
AB 5500 Genetic Analyzer
5,035
69,715,782,503
3,168,008,988,969
45
21
Helicos HeliScope
4,089
113,523,420,849
3,387,048,019,750
29
22
Complete Genomics
3,800
23,101,652,747,573
822,132,235,315,043
35
23
Illumina HiSeq 1500
3,638
136,172,963,432
10,546,191,518,795
77
24
HiSeq X Ten
3,323
474,825,037,084
71,641,070,951,725
150
25
AB SOLiD System 3.0
2,834
316,302,959,473
15,153,791,854,372
47
26
Illumina HiScanSQ
2,289
60,032,413,896
4,403,765,343,450
73
27
Ion Torrent Proton
1,972
33,717,043,759
3,774,205,543,871
111
28
454 GS 20
1,275
383,909,240
51,564,326,794
134
29
AB SOLiD System
686
36,354,743,578
1,494,732,498,755
41
30
AB 3730xL Genetic Analyzer
615
17,550,152
14,159,458,306
806
31
MinION
411
3,058,943
16,275,710,376
5,320
32
Illumina HiSeq 4000
320
13,950,560,569
1,646,888,804,340
118
33
AB 5500xl-W Genetic Analysis System
319
22,062,701,694
1,278,337,966,563
57
34
AB SOLiD 3 Plus System
290
21,675,649,460
930,990,794,598
42
35
AB SOLiD 4hq System
157
1,909,575,076
87,541,732,604
45
36
AB 3130 Genetic Analyzer
101
97
9,417
97
37
Illumina HiSeq 3000
92
12,555,630,355
1,142,793,540,866
91
38
AB 3130xL Genetic Analyzer
27
507,893
74,784,207
147
39
AB 3730 Genetic Analyzer
21
39,181
69,305,404
1,768
40
NextSeq 550
19
1,741,687,353
118,383,504,750
67
41
454 GS FLX
10
5,138,658,407
1,716,337,487,351
334
42
AB 3500xL Genetic Analyzer
9
15,379,525
1,154,032,159
75
43
HiSeq X Five
6
180,291,865
18,680,217,877
103
44
AB SOLiD PI System
3
1,235,294,420
46,993,823,355
38
45
Illumina Genome Analyzer IIx
2
1,717,837,019,450
121,830,895,004,977
70
46
AB 3500 Genetic Analyzer
1
1
798
798
47
AB 310 Genetic Analyzer
1
35,905,953
5,457,704,856
152
-
Others (none,unspecified etc.)
2,190,302
858,147,918,125
90,347,015,042,022
-
Total
4,141,866
74,854,619,002,188
5,389,677,313,140,203
-
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
シーケンサーの実験種別統計(ランデータの件数)
No. Sequencer Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
1
Illumina HiSeq 2000
2
Illumina MiSeq
3
Illumina HiSeq 2500
4
454 GS FLX Titanium
5
Illumina Genome Analyzer II
6
Illumina Genome Analyzer IIx
7
454 GS FLX
8
Illumina Genome Analyzer
9
454 GS Junior
10
Ion Torrent PGM
11
PacBio RS II
12
PacBio RS
13
NextSeq 500
14
AB SOLiD 4 System
15
454 GS FLX+
16
Illumina HiSeq 1000
17
AB 5500xl Genetic Analyzer
18
AB SOLiD System 2.0
19
454 GS
20
AB 5500 Genetic Analyzer
21
Helicos HeliScope
22
Complete Genomics
23
Illumina HiSeq 1500
24
HiSeq X Ten
25
AB SOLiD System 3.0
26
Illumina HiScanSQ
27
Ion Torrent Proton
28
454 GS 20
29
AB SOLiD System
30
AB 3730xL Genetic Analyzer
31
MinION
32
Illumina HiSeq 4000
33
AB 5500xl-W Genetic Analysis System
34
AB SOLiD 3 Plus System
35
AB SOLiD 4hq System
36
AB 3130 Genetic Analyzer
37
Illumina HiSeq 3000
38
AB 3130xL Genetic Analyzer
39
AB 3730 Genetic Analyzer
40
NextSeq 550
41
454 GS FLX
42
AB 3500xL Genetic Analyzer
43
HiSeq X Five
44
AB SOLiD PI System
45
Illumina Genome Analyzer IIx
46
AB 3500 Genetic Analyzer
47
AB 310 Genetic Analyzer
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
シーケンサーの機関別統計(ランデータの件数)
No. Sequencer Name SC GEO BI BGI WUGSC BCM UCSD CFSAN The Wellcome CCME-COLORAD Department o UCSDMI JGI UMIGS
1
Illumina HiSeq 2000
200,083
125,469
159,992
83,068
22,157
20,695
37,949
379
17,563
21,620
9,966
7,116
2,917
2,991
10,969
7,202
2
Illumina MiSeq
26,224
6,082
14,583
41
275
5
4
25,981
4,478
3,703
2,004
320
217
8,860
14
3
Illumina HiSeq 2500
36,039
40,407
7,326
155
348
574
911
3,936
481
1,141
1,741
11,006
1,179
866
4
454 GS FLX Titanium
172
351
8,284
26
12,959
1,747
1
171
343
575
7,643
2,943
1
5
Illumina Genome Analyzer II
18,748
22,679
10,469
28,764
10,049
285
45
38
2,128
2,358
339
6
Illumina Genome Analyzer IIx
21,890
957
2
114
62
7
34
22
3
12
1,270
7
454 GS FLX
4
673
1,867
151
486
3,209
41
365
42
41
2,022
506
3,723
1
8
Illumina Genome Analyzer
2,298
17,055
1,394
1,883
85
31
9
454 GS Junior
105
10
Ion Torrent PGM
6
439
52
26
241
121
172
25
32
11
PacBio RS II
274
11,805
781
92
12
PacBio RS
2,356
22
2,228
1,476
2,638
80
725
20
955
76
4
2
13
NextSeq 500
6,490
755
600
14
AB SOLiD 4 System
1,360
90
6,633
15
454 GS FLX+
2
1
4
16
Illumina HiSeq 1000
2,877
1
21
17
AB 5500xl Genetic Analyzer
5,285
18
AB SOLiD System 2.0
240
6
3,554
19
454 GS
31
48
2
20
AB 5500 Genetic Analyzer
4,412
21
Helicos HeliScope
259
22
Complete Genomics
23
Illumina HiSeq 1500
1,730
24
HiSeq X Ten
2,792
22
427
25
AB SOLiD System 3.0
997
173
20
26
Illumina HiScanSQ
1,142
27
Ion Torrent Proton
534
31
1
28
454 GS 20
8
56
302
82
53
11
125
6
29
AB SOLiD System
416
28
4
1
30
AB 3730xL Genetic Analyzer
31
MinION
10
3
2
32
Illumina HiSeq 4000
57
33
AB 5500xl-W Genetic Analysis System
317
34
AB SOLiD 3 Plus System
57
35
AB SOLiD 4hq System
8
36
AB 3130 Genetic Analyzer
37
Illumina HiSeq 3000
32
38
AB 3130xL Genetic Analyzer
39
AB 3730 Genetic Analyzer
1
40
NextSeq 550
41
454 GS FLX
4
673
1,,867
151
486
3,,209
41
365
42
41
2,,022
506
3,,723
1
42
AB 3500xL Genetic Analyzer
43
HiSeq X Five
44
AB SOLiD PI System
45
Illumina Genome Analyzer IIx
21,,890
957
2
114
62
7
34
22
3
12
1,,270
46
AB 3500 Genetic Analyzer
47
AB 310 Genetic Analyzer
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
シーケンサー毎の年別統計(ランデータの件数)
No. Sequencer Name 2016年 2015年 2014年 2013年 2012年 2011年 2010年 2009年 2008年 2007年 2006年 2005年 OTHER
1
Illumina HiSeq 2000
68,165
237,728
233,813
214,157
175,172
30,983
10,839
192
2
Illumina MiSeq
41,993
106,997
57,791
14,528
4,120
47
3
Illumina HiSeq 2500
28,874
102,032
42,686
6,527
102
4
454 GS FLX Titanium
4,899
32,648
30,812
33,469
20,755
12,568
14,535
2,932
1,157
97
5
Illumina Genome Analyzer II
440
5,133
11,015
16,226
36,734
26,510
19,758
6,780
4,408
273
49
6
Illumina Genome Analyzer IIx
698
7,497
11,353
16,821
11,648
6,633
2,927
867
58
7
454 GS FLX
730
5,194
11,553
4,821
3,812
3,762
7,461
3,050
2,459
877
48
8
8
unspecified
1,051
4,864
18,370
4,295
2,510
92
143
152
283
30
9
Illumina Genome Analyzer
91
1,261
2,391
3,462
5,338
4,898
4,605
3,524
4,254
938
8
10
454 GS Junior
1,023
3,403
5,570
2,164
5,012
1,066
34
11
Ion Torrent PGM
3,914
5,595
4,185
1,580
896
53
2
12
PacBio RS II
509
2,743
8,698
3,720
13
PacBio RS
729
6,519
1,773
2,328
2,482
598
12
14
NextSeq 500
2,335
9,875
393
15
AB SOLiD 4 System
87
490
5,319
2,055
1,203
2,044
6
16
454 GS FLX+
1,412
3,686
3,870
1,522
169
3
17
Illumina HiSeq 1000
227
5,170
2,807
1,364
1,022
2
18
AB 5500xl Genetic Analyzer
235
3,069
3,026
2,017
326
3
19
AB SOLiD System 2.0
2
39
29
28
178
112
977
4,216
20
454 GS
615
4,146
210
196
40
42
5
36
12
21
AB 5500 Genetic Analyzer
457
1,088
3,079
144
267
22
Helicos HeliScope
12
110
52
202
519
2,490
683
21
23
Complete Genomics
4
94
32
1,703
1,063
590
314
24
Illumina HiSeq 1500
137
2,082
1,340
79
25
HiSeq X Ten
2,497
826
26
AB SOLiD System 3.0
4
76
381
389
737
503
541
192
10
1
27
Illumina HiScanSQ
6
798
1,011
379
95
28
Ion Torrent Proton
342
1,169
377
83
1
29
454 GS 20
6
12
36
126
233
372
45
171
28
86
146
14
30
AB SOLiD System
10
79
98
82
242
49
89
22
6
9
31
AB 3730xL Genetic Analyzer
54
291
73
13
108
76
32
MinION
70
322
19
33
Illumina HiSeq 4000
243
77
34
AB 5500xl-W Genetic Analysis System
278
29
12
35
AB SOLiD 3 Plus System
24
52
86
74
29
13
12
36
AB SOLiD 4hq System
3
4
150
37
AB 3130 Genetic Analyzer
100
1
38
Illumina HiSeq 3000
34
58
39
AB 3130xL Genetic Analyzer
24
3
40
AB 3730 Genetic Analyzer
12
4
5
41
NextSeq 550
16
3
42
454 GS FLX
730
5,,194
11,,553
4,,821
3,,812
3,,762
7,,461
3,,050
2,,459
877
48
8
-1,691
43
AB 3500xL Genetic Analyzer
3
5
1
44
HiSeq X Five
6
45
AB SOLiD PI System
1
1
1
46
Illumina Genome Analyzer IIx
698
7,,497
11,,353
16,,821
11,,648
6,,633
2,,927
867
58
-1,674
47
AB 3500 Genetic Analyzer
1
48
AB 310 Genetic Analyzer
1
No. Sequencer 2016年 2015年 2014年 2013年 2012年 2011年 2010年 2009年 2008年 2007年 2006年 2005年 OTHER
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
上位生物種の実験種別統計(全シーケンサーのランデータの件数)
[Illumina Series] [AB SOLiD Series] [454 Series] [PacBio Series] [Ion Torrent Series] [Other Sequencer]
No. Scientific Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS
1
Homo sapiens
142,515
149,191
76,887
39,428
29,307
37,317
7,493
805
4,599
4,443
298
2,945
4,078
990
651
822
679
40
1,262
597
90
323
257
285
74
55
28
12
19
21
67,656
2
Mus musculus
5,864
12,824
92,879
5,425
21,956
6,418
4,211
143
2,137
125
1,266
2
252
325
849
86
210
145
293
78
53
98
62
16
3
6
12,346
3
human gut metagenome
8,998
441
39,364
365
76
379
1
10,100
4
human metagenome
9,468
137
31,717
1
23
13,737
5
soil metagenome
29
654
394
36,538
158
39
25
2
1
1
1
32
1
5,865
6
Danio rerio
5,512
2,838
14,847
404
156
8,235
146
143
6
5
24
49
49
14
6
1,966
7
Streptococcus pneumoniae
18
32,526
88
84
16
3
8
Oryza sativa
83
29,226
1,512
108
38
189
44
6
1
10
20
323
9
Plasmodium falciparum
10,356
135
17,929
60
2
3
27
5
841
10
Saccharomyces cerevisiae
10,360
5,767
137
2,847
32
19
175
56
5
10
767
31
538
79
7,884
11
Staphylococcus aureus
27,370
387
128
17
4
7
462
12
Drosophila melanogaster
3,619
11,025
110
3,479
4
32
13
4
5
203
881
49
97
162
6
14
106
16
18
8,191
13
gut metagenome
1,556
55
19,537
262
119
51
4,772
14
synthetic construct
27
459
295
41
7
21,361
7
310
8
31
11
1,488
15
Salmonella enterica
20,719
1
7
48
16
Escherichia coli
17,728
1,551
672
53
6
12
24
47
11
1
3
10
467
17
Salmonella enterica subsp. enterica
19,027
82
4
18
mouse gut metagenome
2,006
240
14,893
179
201
2
8
22
44
741
19
Caenorhabditis elegans
9,182
2,732
7
2,881
37
161
289
176
28
1
20
234
20
Arabidopsis thaliana
2,254
5,445
2,872
905
6
2,300
448
131
53
100
170
26
10
5
131
2
829
21
Mycobacterium tuberculosis
15
15,068
353
57
17
8
7
3
5
18
22
metagenome sequence
1,331
541
11,641
4
1
889
23
marine metagenome
2,775
530
7,832
16
88
97
9
42
5
815
24
human skin metagenome
1,345
9
5,790
20
675
25
3,676
25
Anopheles gambiae
9,881
545
47
5
80
18
4
8
54
26
rhizosphere metagenome
30
37
9,155
32
789
27
human oral metagenome
456
170
8,279
14
1
929
28
Neisseria meningitidis
9,352
4
29
Listeria monocytogenes
9,283
24
7
1
33
30
unidentified
5,880
90
2,415
8
38
3
9
340
31
Streptococcus pyogenes
8,250
97
3
5
4
102
32
Campylobacter sp.
7,695
33
Rattus norvegicus
4
398
5,680
124
495
146
21
236
10
60
29
1
23
14
6
11
385
34
Bos taurus
21
3,190
2,691
312
24
2
19
60
161
302
37
2
6
1
47
277
35
Klebsiella pneumoniae
5,704
392
63
1
55
202
36
Hordeum vulgare subsp. vulgare
46
194
68
42
81
5,042
6
42
469
37
Campylobacter jejuni
5,880
3
38
Zea mays
404
4,322
41
136
65
97
24
4
84
2
16
393
39
freshwater metagenome
1
428
166
4,465
10
6
383
40
(tax_id:1227552)
669
4,784
41
[Clostridium] difficile
4,511
40
26
74
801
42
Salmonella enterica subsp. enterica serovar Typhi
4,813
21
93
19
12
109
43
Saccharomyces cerevisiae S288c
4,252
93
311
6
8
44
(tax_id:1256227)
97
1,595
92
2,606
45
Salmonella enterica subsp. enterica serovar Typhimurium
3,082
189
644
52
21
2
291
90
46
aquatic metagenome
102
179
3,970
3
16
12
36
23
47
Gasterosteus aculeatus
2,912
339
1
16
4
999
48
uncultured bacterium
141
42
3,674
20
88
2
1
48
49
Sus scrofa
4
787
957
221
26
9
54
1,033
1
189
22
10
213
1
326
50
Pseudomonas aeruginosa
3,011
500
44
70
2
25
194
51
bovine gut metagenome
202
10
3,453
72
2
52
unclassified Bacteria (miscellaneous)
2,555
138
1,042
53
Manihot esculenta
416
108
3
6
4
3,111
54
unclassified sequences
1,094
1,933
599
55
Macaca mulatta
56
1,249
1,034
648
178
2
121
9
92
35
3
4
10
137
56
sediment metagenome
152
64
2,970
73
2
40
5
13
2
107
57
(tax_id:1348798)
41
18
1,766
1
1
1,579
58
Vibrio cholerae
3,146
53
7
5
6
59
Neisseria gonorrhoeae
13
3,060
38
2
4
60
Populus trichocarpa
1,392
1,231
4
1
486
61
Acinetobacter baumannii
2,360
269
236
135
101
62
metagenomes
1,612
9
1,138
321
63
Canis lupus familiaris
1,723
758
257
15
50
63
136
20
1
51
64
human lung metagenome
159
2,795
100
65
Human immunodeficiency virus 1
67
631
21
1,632
1
682
66
Triticum aestivum
1
478
973
147
4
3
44
28
2
38
206
1,101
67
Oncorhynchus mykiss
345
429
2
3
18
41
6
22
2,070
68
Glycine max
845
1,074
63
4
229
41
146
10
80
40
354
69
wastewater metagenome
121
47
2,650
12
2
7
23
70
Solanum lycopersicum
951
1,404
51
23
36
43
48
39
25
111
71
viral metagenome
2,511
94
36
24
8
72
Shigella sonnei
2,625
12
7
73
(tax_id:1441287)
843
1,733
74
Brassica napus
763
811
14
3
4
3
21
2
889
75
food metagenome
179
18
2,141
141
76
Sorghum bicolor
2,132
218
1
5
2
3
98
77
Schizosaccharomyces pombe
861
619
50
606
15
33
45
7
201
78
Streptococcus agalactiae
2,359
17
33
79
Enterococcus faecium
2,292
1
4
3
3
1
80
Miscanthus sinensis
5
2,099
18
1
160
81
Equus caballus
328
840
783
150
1
4
15
61
7
12
24
82
(tax_id:1494075)
2,209
83
hydrocarbon metagenome
123
6
2,023
2
84
marine sediment metagenome
201
308
1,486
3
6
10
6
101
85
(tax_id:1561972)
1
1,978
136
86
human nasopharyngeal metagenome
4
2
2,080
1
10
87
(tax_id:1297885)
115
7
1,965
1
88
Gallus gallus
300
1,157
1
107
12
1
51
6
8
14
12
10
402
89
root metagenome
16
2,035
2
4
90
biofilm metagenome
30
42
44
1,825
10
9
5
7
36
91
Mycobacterium abscessus
1,961
18
92
Zaire ebolavirus
1
994
803
160
93
Escherichia coli str. K-12 substr. MG1655
1,311
370
9
75
6
23
16
9
8
93
94
(tax_id:1202446)
7
2
1,757
52
95
Streptococcus suis
814
6
344
614
96
Haemonchus contortus
1,592
86
95
4
97
sponge metagenome
3
28
539
1,177
98
Salmo salar
440
309
35
1
879
99
Shigella flexneri
1,621
30
7
1
100
(tax_id:1436733)
93
1,383
40
131
No. Scientific Name
WXS
WGS
RNA-Seq
AMPLICON
ChIP-Seq
POOLCLONE
SELEX
Bisulfite
-Seq
CLONE
WGA
miRNA-Seq
EST
DNase-Hyp
ersensiti
Targeted-
Capture
ncRNA-Seq
MNase-Seq
MeDIP-Seq
FL-cDNA
RAD-Seq
Tn-Seq
MBD-Seq
RIP-Seq
MRE-Seq
WCS
CTS
FAIRE-seq
CLONEEND
Hi-C
Synthetic
-Long-Rea
FINISHING
VALIDATIO
N
ChIA-PET
OTHERS
  1. Home
  2. 公共SRAデータ統計情報
  3. 統計表示

公共SRAデータ統計

集計日:2016/06/10
データ件数(Run):4,141,866 件 (live:2,000,154, suppressed:1,782,547, unpublished:356,526, withdrawn:2,639, other:0)
上位生物種の年別統計(ランデータの件数)
No. Scientific name 2016年 2015年 2014年 2013年 2012年 2011年 2010年 2009年 2008年 2007年 2006年 2005年 OTHER
1
Homo sapiens
60,584
114,223
108,638
97,462
104,579
40,667
24,917
8,018
12,659
1,333
78
8
1
2
Mus musculus
10,521
60,703
45,203
25,157
15,758
6,564
3,346
517
296
7
3
human gut metagenome
5,280
17,232
20,026
10,265
5,086
855
388
469
119
4
4
human metagenome
789
3,635
3,392
14,995
9,597
4,125
16,654
1,336
560
5
soil metagenome
4,412
18,119
14,025
4,905
1,657
286
195
33
107
1
6
Danio rerio
3,984
15,473
4,996
3,842
5,608
406
73
18
7
Streptococcus pneumoniae
1,511
12,337
7,874
3,210
6,559
1,242
2
8
Oryza sativa
42
2,456
1,094
660
25,863
132
630
498
185
9
Plasmodium falciparum
328
1,933
17,670
5,739
3,242
425
2
14
5
10
Saccharomyces cerevisiae
3,190
7,246
6,691
9,031
1,470
735
222
104
18
11
Staphylococcus aureus
536
9,470
6,872
3,993
6,152
1,232
119
1
12
Drosophila melanogaster
586
9,562
7,470
2,294
4,381
1,787
1,168
477
238
71
13
gut metagenome
8,526
7,441
3,515
5,392
559
904
14
1
14
synthetic construct
137
21,742
723
868
499
53
18
5
15
Salmonella enterica
4,150
11,511
4,215
657
190
52
16
Escherichia coli
3,046
10,206
4,470
988
1,538
236
69
32
17
Salmonella enterica subsp. enterica
1,621
9,766
6,917
809
18
mouse gut metagenome
713
6,785
6,957
2,299
1,295
228
12
47
19
Caenorhabditis elegans
266
1,584
1,998
9,992
851
681
154
199
16
7
20
Arabidopsis thaliana
321
5,766
4,064
2,598
1,731
697
366
130
14
21
Mycobacterium tuberculosis
514
6,013
1,937
3,395
3,154
395
123
20
22
metagenome sequence
2,533
6,257
3,377
1,534
491
24
189
1
1
23
marine metagenome
576
4,654
1,926
1,508
1,105
986
327
791
9
103
31
117
76
24
human skin metagenome
1,460
3,957
4,479
1,100
310
140
94
25
Anopheles gambiae
2
1,226
2,256
4,891
1,488
768
7
4
26
rhizosphere metagenome
724
675
1,216
1,301
5,354
757
16
27
human oral metagenome
2,687
2,715
2,494
724
879
307
43
28
Neisseria meningitidis
111
3,539
3,033
1,358
975
339
1
29
Listeria monocytogenes
1,918
4,240
2,559
623
2
2
4
30
unidentified
386
3,510
2,083
285
1,185
1,110
189
35
31
Streptococcus pyogenes
124
1,272
4,780
853
822
610
32
Campylobacter sp.
772
2,354
3,714
854
1
33
Rattus norvegicus
66
943
4,932
881
522
90
109
11
89
34
Bos taurus
519
3,315
1,581
637
486
342
116
107
49
35
Klebsiella pneumoniae
1,628
2,473
1,186
824
19
284
2
1
36
Hordeum vulgare subsp. vulgare
41
923
793
367
3,848
11
7
37
Campylobacter jejuni
573
1,249
697
914
2,304
103
43
38
Zea mays
260
1,265
1,403
1,143
1,030
164
9
299
15
39
freshwater metagenome
693
2,410
1,482
715
87
24
16
23
3
6
40
(tax_id:1227552)
277
110
5,065
1
41
[Clostridium] difficile
87
551
586
2,747
942
533
6
42
Salmonella enterica subsp. enterica serovar Typhi
509
1,092
3,131
288
47
43
Saccharomyces cerevisiae S288c
2,612
827