Platform for Drug Discovery



NGS Applications


De novo Genome Sequencing


Denovo-seq_flow
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Recommendation list

SOAPdenovo (PE)
Ray (PE)
Ray (SE)
Sprai
MIRA
SOAPdenovo scaf and GapCloser (PE)
Ray, GC_coverage_length plot, blastx Uniport and blastn NR (PE)
Annotation after assembling (PE)
Annotation after assembling (SE)

Related list

FastQC (PE)
Jellyfish (PE)
Jellyfish (SE)


Note "SE": For single-end read, "PE": For paired-end read, "GE": Genome explorer which is our original genome browser.
It is necessary to register to analyze your own data.
: The popular pipeline or the latest one that the developer recommend.
Notice: Unrecomend not a tool used by the pipeline but the workflow of the pipelie.


References:



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