Platform for Drug Discovery



Bowtie(SE)-SICER-GADEM-MotIV-ChIPpeakAnno


Introduction


    This pipeline predict protein binding regions by SICER which work well for sharp peak.


    Input1 formatCase/ChIP sample data (FASTQ format)
    Input2 formatControl/Input sample data (FASTQ format)
    Library layoutSingle-end only
    SpeciesHuman
    Execution timeAbout 14 hours. (30M and 25M reads single-end [36bp])


    Result
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    (2) Enriched regions
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    (3) Enriched region (Genome Explorer)
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    (6) Known motif report

Table of contents



Inputs

Pipeline history

Outputs


    HTML Report
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    (1) ChIP-seq QC report
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    (2) Enriched regions (BED format)
    (3) Enriched region (Genome Explorer)


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    (4) Peak call summary report
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    (5) De novo motif report
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    (6) Known motif report
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    (7) TSS and GO annotation report

Options


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    (partially omitted)

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