Platform for Drug Discovery



GATK-UnifiedGenotyper-snpEff (hs37d5 only) [IN: bam (max 10)]


Introduction


    Call genomic variants with GATK; thereafter add annotation including prediction with snpEff. This is for human hg19(hs37d5) use only.


    Input formatBAM
    Library layoutUnspecified
    SpeciesHuman(hs37d5) only
    Execution timeAbout 2 hours (9M paired-end reads[76bp+76bp])

    Results
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    Workflow
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