Platform for Drug Discovery



BWA GATK(1.4) Annovar SNP detection (PE)


Introduction


    This pipeline detect SNPs/InDel, and add additional information such as dbSNP annotation, neighbour genes.


    Input formatFASTQ(Illumina, IonTorrent, etc...)
    Library layoutFor paired-end read only
    SpeciesHuman(hg19) only
    Execution timeAbout 22 hours (30M paired-end reads[54bp])

    Results
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    Workflow
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Inputs

Outputs


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Use case


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