Platform for Drug Discovery



Bowtie(SE)+GE


Introduction


    Map short reads to reference genome by using Bowtie with default option, and the result is visualized by Genome Explorer(GE) on the web.



    Input formatFASTQ(Illumina, IonTorrent, etc...)
    Library layoutFor single-end read only
    SpeciesHuman(hg19,hg18),Mouse(mm9,mm10),Rat(rn4),Chicken(galGal3,galGal4),Yeast(sacCer2), Macaque(rheMac2), Arabidopsis(tair10)
    Execution timeAbout 5 hours. (80M single-end reads[75bp])


    Results
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    Pipeline history
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Inputs

Outputs


    Genome Explorer(Our original genome browser)
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Options

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