Platform for Drug Discovery



MLA GATK(1.4) Annovar SNP detection (SE)


Introduction


    This pipeline detect SNPs/InDel, and add additional information such as dbSNP annotation, neighbour genes.


    Input formatFASTQ(Illumina, IonTorrent, etc...)
    Library layoutFor single-end read only
    SpeciesHuman(hg19) only
    Execution timeAbout 1 day (24M single-end reads[76bp])

    Results
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    Workflow
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Inputs

Outputs


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    SNP Annotation Report

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    Mapping report

Options


Use case


Related Information