Platform for Drug Discovery



rSeq(SE)


Introduction


  • rSeq deal with reference isoform sequence generation, sequence mapping to the isoform , gene and isoform expressions (RPKMs) computation.


  • Input formatFASTQ(Illumina, IonTorrent, etc...)
    Library layoutFor single-end read only
    SpeciesHuman(hg19,hg18), Mouse(mm9), Rat(rn4), Chicken(galGal3)
    Execution timeAbout 40min. (80M single-end reads[33bp])


    Results
    Image


    Pipeline history
    Image

Inputs

Outputs


    rSeq output files
    Image

Options


    No option.


Comments




Use case




Related information