Platform for Drug Discovery



BWA, HTSeq, DESeq multi samples differentially expressed gene detection analysis (less than 10 N=1 samples)


Introduction


    BWA, HTSeq, DESeq multi samples differentially expressed gene detection analysis (less than 10 N=1 samples)


    Input formatFASTQ (Illumina)
    Library layoutFor paired-end read only
    SpeciesHuman(hg19),Mouse(mm9),etc.
    Execution timeAbout 14hours. (3 samples)


    Results
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    Pipeline history
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Table of contents

Inputs


    Samples: 1-10 (select more than two samples)

    Check the dataset type explanation: fastq (paired-end)

    Reference gene annotation: GTF format file. (select the annotation file that corresponds to the reference genome)

    Check the dataset type explanation: gtf

Outputs


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    Expression table (by gene)
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    Genomic view (Genome Explorer)

Options


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