Platform for Drug Discovery



BWA DEGSeq multi samples differentially expressed gene detection analysis(less than 10 N=1 samples)


Introduction


  • BWA, DEGSeq multi samples differentially expressed gene detection analysis (less than 10 N=1 samples)


  • Input formatFASTQ (Illumina)
    Library layoutFor paired-end read only
    SpeciesHuman(hg19),Mouse(mm9),etc.
    Execution timeAbout 14hours. (3 samples)


    Results
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    Pipeline history
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Table of contents


Inputs


  • Samples: 1-10 (select more than two samples)


    Check the dataset type explanation: fastq (paired-end)

  • Reference gene annotation: refFlat.txt file. (select the annotation file that corresponds to the reference genome)


    Check the dataset type explanation: genePred(refFlat)

Outputs


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    Expression table (by gene)
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    Genomic view (Genome Explorer)

Options

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