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VarScanインストールログ

  1. インストール
  • $ mkdir VarScan.v2.3.6
    $ cd VarScan.v2.3.6
    wget http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fvarscan%2Ffiles%2F&ts=1389173707&use_mirror=jaist
    $ ls
    VarScan.v2.3.6.jar
  1. 動作確認
  • $ java -jar VarScan.v2.3.6/VarScan.v2.3.6.jar
    VarScan v2.3
    
    USAGE: java -jar VarScan.jar [COMMAND] [OPTIONS]
    
    COMMANDS:
            pileup2snp              Identify SNPs from a pileup file
            pileup2indel            Identify indels a pileup file
    :
            compare                 Compare two lists of positions/variants
            limit                   Restrict pileup/snps/indels to ROI positions
    $

Last edited by nobfujii .
Page last modified on 水曜日 08 of January, 2014 19:03:36 JST.