Supported genome version and species

Table of contents

• Supported genome version and species
• List of supported genome version and species
• Genome from UCSC
• Genome from other institution
• The request for adding species

List of supported genome version and species

List of supported genome version and species Maser supports the following reference genomes.
NOTE: The reference genome that can be used depends on the analysis pipeline.
NOTE: If you can not find the reference genome in the pipeline you want to use, please contact us.

Genome from UCSC

Common name	Genome ID	Since	Scientific name
Human	hg19, GRCh37	Feb. 2009	Homo sapiens
Human	hg18	Mar. 2006	Homo sapiens
Human	hg17	May 2004	Homo sapiens
Human	hg16	Jul. 2003	Homo sapiens
Human	hg15	Apr. 10, 2003	Homo sapiens
Alpaca	vicPac2	Mar. 2013	Vicugna pacos
Alpaca	vicPac1	July 2008	Vicugna pacos
American alligator	allMis1	August 2012	Alligator mississippiensis
Armadillo	dasNov3	Dec. 2011	Dasypus novemcinctus
Atlantic cod	gadMor1	May 2010	Gadus morhua
Baboon	papAnu2	Mar. 2012	Papio anubis
Baboon	papHam1	Nov. 2008	Papio hamadryas
Budgerigar	melUnd1	Sep. 2011	Melopsittacus undulatus
Bushbaby	otoGar3	Mar. 2011	Otolemur garnettii
Cat	felCat5	Sep. 2011	Felis catus
Cat	felCat4	Dec. 2008	Felis catus
Cat	felCat3	Mar. 2006	Felis catus
Chicken	galGal4	Nov. 2011	Gallus gallus
Chicken	galGal3	May 2006	Gallus gallus
Chicken	galGal2	Feb. 2004	Gallus gallus
Chimpanzee	panTro4	Feb. 2011	Pan troglodytes
Chimpanzee	panTro3	Oct. 2010	Pan troglodytes
Chimpanzee	panTro2	Mar. 2006	Pan troglodytes
Chimpanzee	panTro1	Nov. 2003	Pan troglodytes
Coelacanth	latCha1	Aug. 2011	Latimeria chalumnae
Cow	bosTau7	Oct. 2011	Bos taurus
Cow	bosTau6	Nov. 2009	Bos taurus
Cow	bosTau4	Oct. 2007	Bos taurus
Cow	bosTau3	Aug. 2006	Bos taurus
Cow	bosTau2	Mar. 2005	Bos taurus
Cow	bosTau1	May 2004	Bos taurus
Dog	canFam3	Sep. 2011	Canis lupus familiaris
Dog	canFam2	May 2005	Canis lupus familiaris
Dog	canFam1	Jul. 2004	Canis lupus familiaris
Dolphin	turTru2	Oct. 2011	Tursiops truncatus
Elephant	loxAfr3	Jul. 2009	Loxodonta africana
Elephant	loxAfr1	May 2005	Loxodonta africana
Ferret	musFur1	April 2011	Mustela putorius furo
Fugu	fr3	Oct. 2011	Takifugu rubripes
Fugu	fr2	Oct. 2004	Takifugu rubripes
Fugu	fr1	Aug. 2002	Takifugu rubripes
Gibbon	nomLeu3	Oct. 2012	Nomascus leucogenys
Gibbon	nomLeu2	June 2011	Nomascus leucogenys
Gibbon	nomLeu1	Jan. 2010	Nomascus leucogenys
Gorilla	gorGor3	May 2010	Gorilla gorilla gorilla
Guinea Pig	cavPor3	Feb. 2008	Cavia porcellus
Guinea Pig	cavPor2	Oct. 2005	Cavia porcellus
Hedgehog	eriEur1	June 2006	Erinaceus europaeus
Horse	equCab2	Sep. 2007	Equus caballus
Horse	equCab1	Jan. 2007	Equus caballus
Kangaroo rat	dipOrd1	July 2008	Dipodomys ordii
Lamprey	petMar2	Sep. 2010	Petromyzon marinus
Lamprey	petMar1	Mar. 2007	Petromyzon marinus
Lancelet	braFlo1	Mar. 2006	Branchiostoma floridae
Lizard	anoCar2	May 2010	Anolis carolinensis
Lizard	anoCar1	Jan. 2007	Anolis carolinensis
Manatee	triMan1	Oct. 2011	Trichechus manatus latirostris
Marmoset	calJac3	Mar. 2009	Callithrix jacchus
Marmoset	calJac1	Jun. 2007	Callithrix jacchus
Medaka	oryLat2	Oct. 2005	Oryzias latipes
Medium Ground Finch	geoFor1	Apr. 2012	Geospiza fortis
Megabat	pteVam1	July 2008	Pteropus vampyrus
Microbat	myoLuc2	Jul. 2010	Myotis lucifugus
Mouse	mm10	Dec. 2011	Mus musculus
Mouse	mm9	Jul. 2007	Mus musculus
Mouse	mm8	Mar. 2006	Mus musculus
Mouse	mm7	Aug. 2005	Mus musculus
Mouse	mm6	Mar. 2005	Mus musculus
Mouse	mm5	May 2004	Mus musculus
Mouse lemur	micMur1	June 2003	Microcebus murinus
Naked mole-rat	hetGla2	Jan. 2012	Heterocephalus glaber
Naked mole-rat	hetGla1	Jul. 2011	Heterocephalus glaber
Nile tilapia	oreNil2	Jan. 2011	Oreochromis niloticus
Opossum	monDom5	Oct. 2006	Monodelphis domestica
Opossum	monDom4	Jan. 2006	Monodelphis domestica
Opossum	monDom1	Oct. 2004	Monodelphis domestica
Orangutan	ponAbe2	Jul. 2007	Pongo pygmaeus abelii
Painted turtle	chrPic1	Dec. 2011	Chrysemys picta bellii
Panda	ailMel1	Dec. 2009	Ailuropoda melanoleuca
Pig	susScr3	Aug. 2011	Sus scrofa
Pig	susScr2	Nov. 2009	Sus scrofa
Pika	ochPri2	July 2008	Ochotona princeps
Platypus	ornAna1	Mar. 2007	Ornithorhynchus anatinus
Rabbit	oryCun2	Apr. 2009	Oryctolagus cuniculus
Rabbit	oryCun1	May 2005	Oryctolagus cuniculus
Rat	rn5	Mar. 2012	Rattus norvegicus
Rat	rn4	Nov. 2004	Rattus norvegicus
Rat	rn3	Jun. 2003	Rattus norvegicus
Rat	rn2	Jan. 2003	Rattus norvegicus
Rhesus	rheMac3	Oct. 2010	Macaca mulatta
Rhesus	rheMac2	Jan. 2006	Macaca mulatta
Rock hyrax	proCap1	July 2008	Procavia capensis
Sheep	oviAri3	Aug. 2012	Ovis aries
Sheep	oviAri1	Feb. 2010	Ovis aries
Shrew	sorAra1	June 2006	Sorex araneus
Sloth	choHof1	July 2008	Choloepus hoffmanni
Squirrel	speTri2	Nov. 2011	Spermophilus tridecemlineatus
Squirrel monkey	saiBol1	Oct. 2011	Saimiri boliviensis
Stickleback	gasAcu1	Feb. 2006	Gasterosteus aculeatus
Tarsier	tarSyr1	Aug. 2008	Tarsius syrichta
Tasmanian devil	sarHar1	Feb. 2011	Sarcophilus harrisii
Tenrec	echTel2	Nov. 2012	Echinops telfairi
Tenrec	echTel1	July 2005	Echinops telfairi
Tetraodon	tetNig2	Mar. 2010	Tetraodon nigroviridis
Tetraodon	tetNig1	Feb. 2004	Tetraodon nigroviridis
Tree shrew	tupBel1	Dec. 2006	Tupaia belangeri
Turkey	melGal1	Dec. 2009	Meleagris gallopavo
Wallaby	macEug2	Sep. 2009	Macropus eugenii
White rhinoceros	cerSim1	May 2012	Ceratotherium simum
X. tropicalis	xenTro3	Nov. 2009	Xenopus tropicalis
X. tropicalis	xenTro2	Aug. 2005	Xenopus tropicalis
X. tropicalis	xenTro1	Oct. 2004	Xenopus tropicalis
Zebra Finch	taeGut1	Jul. 2008	Taeniopygia guttata
Zebrafish	danRer7	Jul. 2010	Danio rerio
Zebrafish	danRer6	Dec. 2008	Danio rerio
Zebrafish	danRer5	Jul. 2007	Danio rerio
Zebrafish	danRer4	Mar. 2006	Danio rerio
Zebrafish	danRer3	May 2005	Danio rerio
Zebrafish	danRer2	Jun. 2004	Danio rerio
C. intestinalis	ci2	Mar. 2005	Ciona intestinalis
C. intestinalis	ci1	Dec. 2002	Ciona intestinalis
S. purpuratus	strPur2	Sep. 2006	Strongylocentrotus purpuratus
S. purpuratus	strPur1	Apr. 2005	Strongylocentrotus purpuratus
A. gambiae	anoGam1	Feb. 2003	Anopheles gambiae
A. mellifera	apiMel3	May 2005	Apis mellifera
A. mellifera	apiMel2	Jan. 2005	Apis mellifera
A. mellifera	apiMel1	Jul. 2004	Apis mellifera
D. ananassae	droAna3	Feb. 2006	Drosophila ananassae
D. ananassae	droAna2	Aug. 2005	Drosophila ananassae
D. ananassae	droAna1	Jul. 2004	Drosophila ananassae
D. erecta	droEre2	Feb. 2006	Drosophila erecta
D. erecta	droEre1	Aug. 2005	Drosophila erecta
D. grimshawi	droGri2	Feb. 2006	Drosophila grimshawi
D. grimshawi	droGri1	Aug. 2005	Drosophila grimshawi
D. melanogaster	dm3	Apr. 2006	Drosophila melanogaster
D. melanogaster	dm2	Apr. 2004	Drosophila melanogaster
D. melanogaster	dm1	Jan. 2003	Drosophila melanogaster
D. mojavensis	droMoj3	Feb. 2006	Drosophila mojavensis
D. mojavensis	droMoj2	Aug. 2005	Drosophila mojavensis
D. mojavensis	droMoj1	Aug. 2004	Drosophila mojavensis
D. persimilis	droPer1	Oct. 2005	Drosophila persimilis
D. pseudoobscura	dp4	Feb. 2006	Drosophila pseudoobscura
D. pseudoobscura	dp3	Nov. 2004	Drosophila pseudoobscura
D. pseudoobscura	dp2	Aug. 2003	Drosophila pseudoobscura
D. sechellia	droSec1	Oct. 2005	Drosophila sechellia
D. simulans	droSim1	Apr. 2005	Drosophila simulans
D. virilis	droVir3	Feb. 2006	Drosophila virilis
D. virilis	droVir2	Aug. 2005	Drosophila virilis
D. virilis	droVir1	Jul. 2004	Drosophila virilis
D. willistoni	droWil1	Feb. 2006	Drosophila willistoni
D. yakuba	droYak2	Nov. 2005	Drosophila yakuba
D. yakuba	droYak1	Apr. 2004	Drosophila yakuba
T. castaneum	triCas2	Sep. 2005	Tribolium castaneum
C. brenneri	caePb2	Feb. 2008	Caenorhabditis brenneri
C. brenneri	caePb1	Jul. 2007	Caenorhabditis brenneri
C. briggsae	cb3	Jan. 2007	Caenorhabditis briggsae
C. elegans	ce10	Oct. 2010	Caenorhabditis elegans
C. elegans	ce6	May 2008	Caenorhabditis elegans
C. elegans	ce4	Jan. 2007	Caenorhabditis elegans
C. elegans	ce2	Mar. 2004	Caenorhabditis elegans
C. japonica	caeJap1	Mar. 2008	Caenorhabditis japonica
C. remanei	caeRem3	May 2007	Caenorhabditis remanei
C. remanei	caeRem2	Mar. 2006	Caenorhabditis remanei
P. pacificus	priPac1	Feb. 2007	Pristionchus pacificus
Yeast (S. cerevisiae)	sacCer3	Apr. 2011	Saccharomyces cerevisiae
Yeast (S. cerevisiae)	sacCer2	Jun. 2008	Saccharomyces cerevisiae
Yeast (S. cerevisiae)	sacCer1	Oct. 2003	Saccharomyces cerevisiae
Sea Hare (Aplysia californica)	aplCal1	Sep. 2008	Aplysia californica

Genome from other institution

Common name	Genome ID	Since
fission yeast(Schizosaccharomyces pombe)	S_pombe.ASM294v2.19	-
fission yeast(Schizosaccharomyces pombe)	S_pombe_972h	-
Escherichia coli	ecoli_NC000913.2	-
Escherichia coli	ecoli_NC002695.1	-
Human	hs37d5	-
Rat	rnJan2003	-
Rat	rnJun2003	-
silkworm(Bombyx mori)	silkgenome_Integrated	-
silkworm(Bombyx mori)	silkgenome_v2_mt	-
thale cress(Arabidopsis thaliana)	tair10	-
thale cress(Arabidopsis thaliana)	tair9	-

The request for adding species

• Please contact with the following information for your request adding other species not listed on the above list.

• #	Required	Item	Example
  1	Yes	Scientific name	Arabidopsis thaliana
  2	Yes	Genome version identifier	tair10
  3	Yes	Access URI for genome file	ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/
  4	No	Entrez taxonomy ID	3702
  5	No	Common name	thale cress