BreakDancer (PE)
Introduction
BreakDancer is genome-wide detection of structural variants from next generation paired-end sequencing reads. [input:bam(sorted and indexed), output:breakdancer formatprovides]
| Input format | BAM |
| Library layout | Unspecified |
| Species | Unspecified |
| Execution time | About 3 hours. (8GB with 28M paired-end reads [54bp+54bp]) |
Results
Pipeline history
Inputs
BAM(SAM)-formatted dna sequence file (single-end)
read1
|
BAM(SAM) Format Specification
Outputs
Genome Explorer(Our original genome browser)
The Break dancer original output file
BreakDancer output Specification
Options
Comments
Use case
Related information
Public
| BreakDancer | (Original) | (NGS Surfer's wiki) |