Platform for Drug Discovery



blastn for NT or CAMERA


Introduction


    This pipeline is useful for the researcher who deal with metagenome data. For this pipeline, FASTA is needed as input, which is obtained by conversion from FASTQ. Then, homology search of blastn is performed against NCBI-NT or CAMERA database. Using MEGAN software (external standalone tool), output files can be used for taxonomical analysis.


    Input formatFASTA
    Library layoutSingle-end
    Execution timeAbout a few days for NT

Table of contents

Inputs


    Sequence data (nucleotide) (FASTA format): 1


Outputs


    Workflow
    Image

    1. FASTA file
    Image
    FASTQ-FASTA conversion
    2. Blast result
    Image
    Homology search result using blastn

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