Platform for Drug Discovery

Bismark base multi sample comparison pipeline(SE, with RefFlat annotation)


    This pipeline maps bisulfate NGS reads to a reference genome using Bismark and compare methylation rates among multiple samples.

    Input formatFASTQ (single-end), BED, genePred (refFlat)
    Library layoutSingle-end
    Execution timeAbout 5 hours. (3 samples that contain about 4 million reads)

    For detailed information, please see Bismark base multi sample comparison pipeline(PE, with RefFlat annotation)