Platform for Drug Discovery

BMap base multi sample comparison pipeline (PE)


    This pipeline maps bisulfate NGS reads to a reference genome using BMap and compare methylation rates among multiple samples.

    Input formatFASTQ, BED, genePred (refFlat)
    Library layoutPaired-end
    Execution timeAbout 5 hours (3 samples that contain about 4 million reads)

    For detailed information, please refer Bismark base multi sample comparison pipeline.